Erin Eggleston
Office
McCardell Bicen Hall
Tel
(802) 443-5779
Email
eeggleston@middlebury.edu
Office Hours
F'23 MBH 309a: M 12:30-12:00, R 10:30-12:00, or by appointment

Who runs the world? Microbes! I’m a molecular microbial ecologist, meaning I use molecular biological techniques to ask questions and gain insight into microbial ecology. The lab’s current research investigates bacteria, viruses, and archaea in aquatic systems from mercury methylation in St. Lawrence River wetland sediments, to Bahamian coral microbiomes, and harmful algal blooms in Vermont lakes.



**If you’re interested in joining the Eggleston Lab please email me with your specific research interests, your CV or resume, and your current transcript**

Courses Taught

Course Description

Ecology and Evolution
In this introduction to ecology and evolutionary biology we will cover the topics of interspecific interactions (competition, predation, mutualism), demography and life-history patterns, succession and disturbance in natural communities, species diversity, stability and complexity, causes of evolutionary change, speciation, phylogenetic reconstruction, and population genetics. The laboratory component will examine lecture topics in detail (such as measuring the evolutionary response of bacteria, adaptations of stream invertebrates to life in moving water, invasive species and their patterns of spread). We will emphasize experimental design, data collection in the field and in the laboratory, data analysis, and writing skills. This course is not open to seniors and second semester juniors in the Fall. 3 hrs. lect./disc./3 hrs. lab

Terms Taught

Fall 2019, Fall 2020, Spring 2023, Fall 2023, Spring 2024

Requirements

DED, SCI

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Course Description

Microbiology
The microbiological principles emphasized in this class will provide students with a foundation for advanced study in many areas of contemporary biology. The course will integrate basic and applied aspects of microbiology into a study of the prokaryotic microorganisms. General principles of bacterial cell structure, function, and the role of microorganisms in industry, agriculture, biotechnology, and disease will be discussed. An independent laboratory project will stress basic microbiological techniques as applied to the isolation, characterization, and identification of microorganisms from the natural environment. (BIOL 0140 and BIOL 0145) 3 hrs. lect./4 hrs. lab./1 hr. prelab.

Terms Taught

Spring 2021, Spring 2023, Spring 2024

Requirements

CW, SCI

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Course Description

Molecular Microbial Ecology
Molecular microbial ecology (MME) uses leading-edge molecular tools to study the interactions and diversity of microorganisms in the natural environment. MME covers topics ranging from ancient polar microbes, the human microbiome, and possibly life beyond Earth. This course will discuss papers that highlight modern technical approaches and form the current theoretical framework in microbial ecology. The laboratory will examine the structure (who is there) and function (what are they doing) of microbial communities in environmental samples. We will cultivate novel microorganisms and analyze nucleic acids via community fingerprinting, functional gene analysis, and the computational exploration of metagenomic datasets.  (BIOL 0140, BIOL 0145 and CHEM 0103 or 0104 or waiver) 3 hrs. lect./3 hrs. lab

Terms Taught

Spring 2020, Fall 2020, Fall 2022

Requirements

SCI

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Course Description

Advanced Field Biology: Place-based Global Biology Education
In this upper-level biology course, we will conduct field-based scientific observation, sample and data collection, and interpretation of biological phenomena. Students will be deeply engaged in off-campus, place-based learning at Breadloaf and in the Adirondacks practicing molecular and population genetics, ecology, biogeochemistry, and site mapping. The course is two weeks off-campus and two weeks on-campus conducting group research projects integrating field observations with laboratory analysis. Students will collaborate and partner with local community members on intercultural projects with ethical local impact and relevance. Open to Biology majors or by waiver. (BIOL 0145 and BIOL 0140 and a 300 level BIOL class with laboratory or by waiver)

Terms Taught

Winter 2020

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Course Description

Extremophiles: conquering Earth’s Extreme Environments
Even the most extreme environments are teeming with microbial life. From highly acidic streams to hydrothermal vents with temperatures exceeding 120ºC, microorganisms manage to not only grow, but thrive. How? We will utilize biogeochemistry and cellular biology to characterize these unique microbial processes, and their impact on ecosystems, through critical reading and robust discussion of primary literature. Student-driven research will provide opportunities for advanced oral and written communication skill development. (Any 300-level BIOL course with lab, or by waiver) 3 hrs. sem.

Terms Taught

Fall 2019, Fall 2023

Requirements

SCI

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Course Description

Independent Study
In this course students complete individual projects involving laboratory and/or field research or extensive library study on a topic chosen by the student and a faculty advisor. Prior to registering for BIOL 0500, a student must have discussed and agreed upon a project topic with a member of the Biology Department faculty. Additional requirements include attendance at all Biology Department seminars and participation in any scheduled meetings with disciplinary sub-groups and lab groups. This course is not open to seniors; seniors should enroll in BIOL 0700, Senior Independent Study. (BIOL 0211. Approval required) 3 hrs. disc.

Terms Taught

Fall 2019, Winter 2020, Spring 2020, Fall 2020, Winter 2021, Spring 2021, Fall 2021, Winter 2022, Spring 2022, Fall 2022, Winter 2023, Spring 2023, Fall 2023, Winter 2024, Spring 2024

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Course Description

Senior Independent Study
In this course students complete individual projects involving laboratory and/or field research or extensive library study on a topic chosen by the student and a faculty advisor. Prior to registering for BIOL 0700, a student must have discussed and agreed upon a project topic with a member of the Biology Department faculty. Additional requirements include attendance at all Biology Department seminars and participation in any scheduled meetings with disciplinary sub-groups and lab groups. (BIOL 0211. Approval required; open only to seniors) 3 hrs. disc.

Terms Taught

Fall 2019, Winter 2020, Spring 2020, Fall 2020, Winter 2021, Spring 2021, Fall 2021, Winter 2022, Spring 2022, Fall 2022, Winter 2023, Spring 2023, Fall 2023, Winter 2024, Spring 2024

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Course Description

Senior Thesis
Seniors majoring in Biology who have completed one or more semesters of BIOL 0500 or BIOL 0700 and who plan to complete a thesis should register for BIOL 0701. In this course students will produce a written thesis, deliver a public presentation of the research on which it is based, and present an oral defense of the thesis before a committee of at least three faculty members. Additional requirements include attendance at all Biology Department seminars and participation in any scheduled meetings with disciplinary sub-groups and lab groups. Open to Biology and joint Biology/Environmental Studies majors. (BIOL 0211 and BIOL 0500 or BIOL 0700 or waiver; instructor approval required for all students) 3 hrs. disc

Terms Taught

Fall 2019, Winter 2020, Spring 2020, Fall 2020, Winter 2021, Spring 2021, Fall 2021, Winter 2022, Spring 2022, Fall 2022, Winter 2023, Spring 2023, Fall 2023, Winter 2024, Spring 2024

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Course Description

Senior Independent Study
In this course, seniors complete an independent research or creative project on a topic pertinent to the relationship between humans and the environment. During the term prior to enrolling in ENVS 0700, a student must discuss and agree upon a project topic with a faculty advisor who is appointed in or affiliated with the Environmental Studies Program and submit a brief project proposal to the Director of Environmental Studies for Approval. The expectations and any associated final products will be defined in consultation with the faculty advisor. Students may enroll in ENVS 0700 as a one-term independent study OR up to twice as part of a multi-term project, including as a lead-up to ENVS 0701 (ES Senior Thesis) or ENVS 0703 (ES Senior Integrated Thesis). (Senior standing; Approval only)

Terms Taught

Fall 2019, Fall 2020

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Course Description

Gut Check: Exploring Microbiomes
Imagine there were an organ in your body with a mass similar to that of your heart, which trained your immune system, affecting your weight and perhaps even your behavior. Wouldn’t you want to know? There is such an organ — your microbiome, the collection of microbes in and on your body.
You are not alone; corals, squid, beetles, and many other organisms harbor microbiomes that generate nutrients, produce light, and defend their host organisms in the environment. Increasingly, we also understand microbiomes to be intrinsically and deeply embedded within social and environmental (in)justice. We will read I Contain Multitudes by Ed Yong, as well as other popular science and research papers to investigate these fascinating microbes.

Terms Taught

Spring 2020, Fall 2022

Requirements

CW

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Course Description

Terms Taught

Spring 2020, Spring 2021, Spring 2022, Spring 2023, Spring 2024

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Course Description

Independent Research
This course is for non-seniors wishing to conduct independent research in Molecular Biology and Biochemistry under the guidance of a faculty mentor. Additional requirements include attendance at all MBBC-sponsored seminars and seminars sponsored by the faculty mentor’s department, and participation in any scheduled meetings and disciplinary sub-groups and lab groups. (Approval required).

Terms Taught

Fall 2022, Spring 2023, Fall 2023, Spring 2024

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Course Description

Senior Independent Research
Seniors conducting independent research in Molecular Biology and Biochemistry under the guidance of a faculty mentor should register for MBBC 0700 unless they are completing a thesis project (in which case they should register for MBBC 0701). Additional requirements include attendance at all MBBC-sponsored seminars and seminars sponsored by the faculty mentor’s department, and participation in any scheduled meetings and disciplinary sub-groups and lab groups. (Approval required).

Terms Taught

Winter 2020, Spring 2020, Fall 2020, Winter 2021, Spring 2021, Fall 2021, Winter 2022, Spring 2022, Fall 2022, Winter 2023, Spring 2023, Fall 2023, Winter 2024, Spring 2024

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Course Description

Senior Thesis
This course is for seniors completing independent thesis research in Molecular Biology and Biochemistry that was initiated in BIOL 0500, CHEM 0400, MBBC 0500, or MBBC 0700. Students will attend weekly meetings with their designated research group and engage in one-on-one meetings with their research mentor to foster understanding in their specialized research area. Students will also practice the stylistic and technical aspects of scientific writing needed to write their thesis. (BIOL 0500, CHEM 0400, MBBC 0500, MBBC 0700) (Approval required).

Terms Taught

Winter 2020, Spring 2020, Fall 2020, Winter 2021, Spring 2021, Fall 2021, Winter 2022, Spring 2022, Fall 2022, Winter 2023, Spring 2023, Fall 2023, Winter 2024, Spring 2024

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Publications