Lindsay Repka
Office
McCardell Bicentennial Hall 451
Tel
(802) 443-3496
Email
lrepka@middlebury.edu
Office Hours
Spring 2024: Tuesday 11am - 12pm, Wednesday 1pm - 2pm, and Thursday 3pm - 4pm and by appointment.

Lindsay Repka is an Assistant Professor in the Department of Chemistry & Biochemistry at Middlebury College. Lindsay earned her B.A. in chemistry from Barnard College, pursuing research as an undergraduate with Professor John Tovar at Johns Hopkins University and Professor Christian Rojas at Barnard College. Lindsay subsequently earned her Ph.D. in organic chemistry from Caltech under the guidance of Professor Sarah Reisman. She then pursued postdoctoral work in biochemistry at the University of Illinois at Urbana–Champaign in the laboratory of Professor Wilfred van der Donk before joining the faculty at Middlebury College in 2017.

At Middlebury, Lindsay teaches courses in organic chemistry and biochemistry and pursues research in chemical biology at the interface of these two fields. Her research laboratory is focused on developing new methods for identifying the biological targets of molecules that have promising biological activity and thus potential as drugs.  

Courses Taught

Course Description

Organic Chemistry I: Structure and Reactivity
The course will provide students with an introduction to the structure and reactivity of organic molecules sufficient to continue directly to the study of biochemistry (CHEM 0322). Topics covered will include models of chemical bonding, acid-base relationships, three-dimensional molecular structure (conformations and stereochemistry), reaction mechanisms and energy diagrams, substitution and elimination reactions, carbonyl reactions (additions, reductions, interconversions, and alpha-reactivity), and the fundamentals of biological molecules (carbohydrates, DNA, and RNA). Laboratory experiments will relate to purification techniques (recrystallization, distillation, extraction, and chromatography), as well as microscale organic reactions that complement the lecture material. (CHEM 0104 or CHEM 0107) 3 hrs. lect., 3 hrs. lab.

Terms Taught

Spring 2021, Spring 2023, Fall 2023, Spring 2024

Requirements

SCI

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Course Description

Organic Chemistry II: Synthesis and Spectroscopy
In this course we will explore how organic molecules are made and their structures are identified. The study of organic reactions will continue from CHEM 0203 with radical reactions, alkene and alkyne additions, aromatic reactions, oxidations and reductions, and additional carbonyl reactions. Emphasis in this course will be placed on using reactions in sequences to synthesize larger and more complex molecules. The theory and practice of mass spectrometry and UV-Vis, IR, and NMR spectroscopy will be studied as a means to elucidate the exact structures of organic molecules. Laboratory experiments will focus on synthetic techniques that complement the lecture material and the identification of complex unknowns via
GC-MS, IR, and NMR. (CHEM 0203) 3 hrs. lect., 3 hrs. lab.

Terms Taught

Spring 2020, Fall 2022, Spring 2023

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Course Description

Chemical Biology
In this course we will explore scientific advances propelled by research at the interface of organic chemistry and molecular biology. The field of chemical biology involves the manipulation of biological macromolecules (proteins, nucleic acids, lipids, and carbohydrates) using synthetic organic chemistry. These organic transformations are not used by nature and thus permit site-specific modifications that enable study or alteration of macromolecule function. Examples include antibody-drug conjugates for targeted chemotherapy and fluorescent probes of macromolecule interactions. Guided by the primary literature, we will explore developments that span a variety of applications and explore potential new directions, culminating in a final project. Fundamentals of molecular biology will be discussed as they pertain to our exploration of chemical biology. (CHEM 0203) 3 hrs. lect.

Terms Taught

Spring 2020

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Course Description

Biochemistry of Macromolecules
This course is an introduction to biochemistry that focuses on the chemical and physical properties of amino acids, proteins, lipids, carbohydrates, and nucleic acids. Specific topics include the structure and function of proteins, enzyme mechanisms and kinetics, how carbohydrates and lipids contribute to vital cellular and organismal functions, and informational biochemistry (DNA, RNA, and specific enzymes and processes leading to the production of regulatory RNA and proteins). Specific topics from the primary literature will be explored to illustrate how particular techniques and experimental approaches are used to gain a new understanding of biochemistry and molecular biology. (CHEM 0203 or CHEM 0242) 3 hrs. lect., 1 hr. disc.

Terms Taught

Fall 2020

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Course Description

Seminar in Chemical Research
This seminar provides students with experiences to support the preparation of a senior thesis. As the course involves participation in a mentored laboratory project and the intent to complete a senior thesis, students must make arrangements to work with a faculty advisor prior to gaining approval for course registration. The classroom portion of this seminar focuses on reading the scientific literature, giving effective oral presentations, and writing the thesis introduction. Particular emphasis will be given to computer and technology issues related to oral and written presentations. Participation will normally be followed by registration for CHEM 0500 or CHEM 0700 (winter term and spring). (Senior standing; Approval only) 2 hrs. sem., 12 hrs. lab.

Terms Taught

Fall 2020

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Course Description

Independent Study Project
Individual study for qualified students. (Approval required)

Terms Taught

Spring 2020, Fall 2020, Winter 2021, Spring 2021, Fall 2021, Winter 2022, Spring 2022, Fall 2022, Winter 2023, Spring 2023, Fall 2023, Winter 2024, Spring 2024, Fall 2024, Winter 2025, Spring 2025

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Course Description

Senior Research
In this course students complete individual projects involving laboratory research on a topic chosen by the student and a faculty advisor. Prior to registering for CHEM 0700, a student must have discussed and agreed upon a project topic with a faculty member in the Chemistry and Biochemistry Department. Attendance at all Chemistry and Biochemistry Department seminars is expected. (Approval required; open only to seniors)

Terms Taught

Spring 2020, Fall 2020, Winter 2021, Spring 2021, Fall 2021, Winter 2022, Spring 2022, Fall 2022, Winter 2023, Spring 2023, Fall 2023, Winter 2024, Spring 2024, Fall 2024, Winter 2025, Spring 2025

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Course Description

Senior Thesis
Students who have initiated research projects in CHEM 0400 and who plan to complete a senior thesis should register for CHEM 0701. Students are required to write a thesis, give a public presentation, and defend their thesis before a committee of at least three faculty members. The final grade will be determined by the department. Attendance at all Chemistry and Biochemistry Department seminars is expected. (CHEM 0400; approval required)

Terms Taught

Spring 2020, Fall 2020, Winter 2021, Spring 2021, Fall 2021, Winter 2022, Spring 2022, Fall 2022, Winter 2023, Spring 2023, Fall 2023, Winter 2024, Spring 2024, Fall 2024, Winter 2025, Spring 2025

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Course Description

Terms Taught

Spring 2021

Requirements

CW

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Course Description

Independent Research
This course is for non-seniors wishing to conduct independent research in Molecular Biology and Biochemistry under the guidance of a faculty mentor. Additional requirements include attendance at all MBBC-sponsored seminars and seminars sponsored by the faculty mentor’s department, and participation in any scheduled meetings and disciplinary sub-groups and lab groups. (Approval required).

Terms Taught

Fall 2022, Fall 2023, Winter 2024, Spring 2024, Fall 2024, Winter 2025, Spring 2025

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Course Description

Senior Independent Research
Seniors conducting independent research in Molecular Biology and Biochemistry under the guidance of a faculty mentor should register for MBBC 0700 unless they are completing a thesis project (in which case they should register for MBBC 0701). Additional requirements include attendance at all MBBC-sponsored seminars and seminars sponsored by the faculty mentor’s department, and participation in any scheduled meetings and disciplinary sub-groups and lab groups. (Approval required).

Terms Taught

Spring 2020, Fall 2020, Winter 2021, Spring 2021, Fall 2021, Winter 2022, Spring 2022, Fall 2022, Winter 2023, Spring 2023, Fall 2023, Winter 2024, Spring 2024, Fall 2024, Winter 2025, Spring 2025

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Course Description

Senior Thesis
This course is for seniors completing independent thesis research in Molecular Biology and Biochemistry that was initiated in BIOL 0500, CHEM 0400, MBBC 0500, or MBBC 0700. Students will attend weekly meetings with their designated research group and engage in one-on-one meetings with their research mentor to foster understanding in their specialized research area. Students will also practice the stylistic and technical aspects of scientific writing needed to write their thesis. (BIOL 0500, CHEM 0400, MBBC 0500, MBBC 0700) (Approval required).

Terms Taught

Spring 2020, Fall 2020, Winter 2021, Spring 2021, Fall 2021, Winter 2022, Spring 2022, Fall 2022, Winter 2023, Spring 2023, Fall 2023, Winter 2024, Spring 2024, Fall 2024, Winter 2025, Spring 2025

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Publications